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- Reverse Engineering and Analysis of Regulatory Networks
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- Integration of Genomics Data
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ADOMETA
Lead Investigator(s) Dennis Vitkup
A bioinformatics resource designed to predict genes for orphan metabolic activities — known biochemical activities not currently assigned to genes in some or all organisms.
▶ Software Page CTK
Lead Investigator(s) Chaolin Zhang
A software package for comprehensive and streamlined analysis of CLIP data, including peak calling and identification of precise protein-RNA crosslink sites.
▶ Software Page HotSpots
Lead Investigator(s) Yufeng Shen
A method to infer cancer somatic mutation hotspots.
▶ Software Page mCarts
Lead Investigator(s) Chaolin Zhang
A hidden Markov model (HMM)-based method for predicting clusters of RNA motif sites.
▶ Software Page mRIN
Lead Investigator(s) Chaolin Zhang
A method for assessing a quantitative measure of mRNA integrity directly from RNA-seq data.
▶ Software Page OLego
Lead Investigator(s) Chaolin Zhang
A program for mapping RNA-seq reads, including de novo identification of exon junctions.
▶ Software Page Quantas
Lead Investigator(s) Chaolin Zhang
A pipeline for analyzing alternative splicing using RNA-seq data.
▶ Software Page TOBI
Lead Investigator(s) Raul Rabadan
TOBI predicts somatic variants from .vcf or .bam input.
▶ Software Page